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Species belonging to selected taxon:

Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002419
species: Raphanus sativus var. oleiformis
miRNA family: MIRf351
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTCTGGCTTGGTACTTTTGA

miRNA*
AGAGATACGCAAGCCGAAGAGC

mismatches: 3
bulges: 1

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pre-miRNA
GAAGTGGGTCGCAGAGATACGCAAGCCGAAGAGCAGATCACGTCTCTGGCTTGGTACTTTTGATACAGCCGA

dot-bracket secondary structure
......(((..(((((.(((.(((((((.(((..........))).)))))))))).))))).....)))..


SIMILARITIES
miRBase no hits

PMRD ath-miRf10708-akr: 0.0008

microPC no hits
UniProt sp|Q9M0J3|ERF54_ARATH: 0.000004

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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